The probability of any outcome $i$ in a multinomial logit model is
$$P_i=\dfrac{exp(X_i\beta)}{\sum_Jexp(X_j\beta)}$$
Where $\beta$ is a vector of estimated parameters, which you say you already have.
The $X$ vector is composed of two types of variables:
Generic variables, which vary across alternative. For these variables, you get exactly one estimated parameter for the entire model.
Alternative-specific variables, which are endemic to the
decision-maker. These variables create a different $\beta$ for each alternative.
The thing to remember is that $\beta_0=0$ for all of the alternative-specific parameters in the reference alternative, but not for the generic parameters. So in a model with three alternatives, one generic variable, and one alternative-specific variable, the utility equations ($X\beta$) are
$$U_0=(0)+ \beta_1x_1 + (0)$$
$$U_1=\beta_{01} + \beta_1x_1 + \beta_{21}x_2$$
$$U_2=\beta_{02} + \beta_1x_1 + \beta_{22}x_2$$
$\beta_1$ shows up in every equation because it is generic. $\beta_0$ and $\beta_2$ are different for each alternative (one a constant, the other a parameter), and are equal to zero for the reference alternative.